PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZM93S
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 408aa    MW: 45427.2 Da    PI: 8.732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZM93SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-065072123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Aradu.ZM93S 50 YVCEICNQGFQRDQNLQMHRRRH 72
                 9*********************9 PP

2zf-C2H2187.7e-06131153123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k +  +s++k Hi+t+
  Aradu.ZM93S 131 WVCHKCSKGYAVQSDYKAHIKTC 153
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.03E-54773No hitNo description
Gene3DG3DSA:3.30.160.601.6E-54972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975072IPR007087Zinc finger, C2H2
PROSITE patternPS01359052136IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM0035521095125IPR015880Zinc finger, C2H2-like
SMARTSM0035567131158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLDNTINTAS CSSDAQNLPN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY VCEICNQGFQ  60
RDQNLQMHRR RHKVPWKLLK RQGGGGTTIM KKKVFVCPEP SCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCHKCSKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE SFIEHQDACT  180
VRQHRPLQPA CSSRTASSTS PSSDANFTVT APLQPLPPPP PPLPSPSEIH RNNSNTHNLE  240
LQLLPTSINS HQNHETRLRL AIGGDNGRSV EEERNNNNSV MMVGDSSSTL EVARLKECAG  300
QELKLAMAEK AYAEEARREA KRQIEIAELE FENAKRIRKQ AQAELGKAEA LRKQAIKKMT  360
STLMEITCHA CKQNFHSSNN GVGVPSEETS IVMSYMSSAN NTDDGEAE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957925.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-153IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLK7KQ350.0K7KQ35_SOYBN; Uncharacterized protein
STRINGGLYMA05G26780.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-108indeterminate(ID)-domain 14